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Perimenopause & Constipation: Why It Happens and How to Fix It Naturally

  • Writer: Dr. Jen
    Dr. Jen
  • Aug 10
  • 3 min read

Constipation can be frustrating, uncomfortable, and even painful — and for many women, it becomes more common during perimenopause. If you’ve noticed that your digestion isn’t as regular as it used to be, you’re not alone.

In this post, we’ll dive into why perimenopause can trigger constipation and how you can address it naturally using targeted lifestyle changes and supplements.

Why Perimenopause Affects Digestion

Perimenopause is the transitional phase leading up to menopause, typically beginning in your late 30s to early 50s. During this time, hormone levels shift significantly — and those changes directly impact digestion and bowel function.

1. Progesterone Decline Slows Gut Motility

Progesterone helps relax smooth muscle throughout the body, including the intestines. In healthy balance, this promotes a rhythmic wave-like motion called peristalsis, which moves stool through your colon.

  • In perimenopause, progesterone levels drop, reducing the strength and frequency of these contractions. This means stool sits longer in the colon, where more water is absorbed — resulting in harder stools.

2. Estrogen Fluctuations Affect Bile Flow & Water Balance

Estrogen supports healthy bile production, which helps lubricate and soften stool. When estrogen drops, bile output can decrease, making stool drier and more difficult to pass.

  • Estrogen also influences fluid retention and electrolyte balance, both of which affect how hydrated your stool is.

3. Cortisol & Stress Slow the Digestive System

Perimenopause often coincides with major life stressors — career, caregiving, and aging parents. Stress increases cortisol, which diverts blood away from the gut and slows digestion. This “fight or flight” response makes constipation more likely.

4. Thyroid Function Can Shift

Lower estrogen and progesterone can unmask or contribute to low thyroid function, which slows the metabolism and gut motility. Many women find constipation is one of the earliest signs of sluggish thyroid activity.

5. Loss of Muscle Mass Impacts Elimination

As estrogen drops, it becomes harder to maintain lean muscle — including the pelvic floor and abdominal muscles that help with bowel movements. Weakness here can make elimination more difficult.

6. Microbiome Changes

Hormonal changes also alter your gut microbiome. Less diversity in gut bacteria can lead to slower digestion, more bloating, and harder stools.

How to Relieve Constipation During Perimenopause

While occasional constipation happens to everyone, if you’re noticing it regularly, it’s important to address it. Not only does constipation cause discomfort, but it also increases the reabsorption of toxins and estrogen metabolites that the body is trying to eliminate.

Here’s a natural, integrative approach — featuring targeted supplements from HealthyByDrJen.shop.

1. Support Gut Motility & Relaxation

Tri-Mag – Magnesium is one of the most effective and gentle ways to support regular bowel movements. It relaxes intestinal muscles and draws water into the colon to soften stool.

  • Use: 2 capsules before bed to promote healthy, comfortable elimination in the morning.

2. Restore a Healthy Gut Microbiome

Probiotic Complete – A diverse, high-quality probiotic helps restore beneficial bacteria, improve digestion, and regulate bowel movements.

  • Use: Take daily with food to promote balanced gut flora and reduce bloating.

3. Keep Stool Soft & Easy to Pass

Inositol + – While known for its blood sugar benefits, inositol also supports gentle motility and can help keep stool moving without harsh laxatives.

  • Use: 1 scoop daily in water or a smoothie.

4. Reduce Gut Inflammation & Promote Detox

Gut Protect – Rich in bovine IgG helping to reduce inflammation, and aid detox pathways.

  • Use: 4 capsules daily for cellular and digestive health.

5. Boost Energy for Digestive Function

MitoBoost – Supports mitochondrial energy production for every cell, including those that power intestinal contractions.

6. Support Lean Muscle and Movement

Creatine and Longevity – Supports lean muscle and work outs.


Lifestyle Tips to Maximize Results

  • Hydration: Drink at least 2–3 liters of water daily to keep stools soft.

  • Fiber: Aim for 25–30 grams/day from vegetables, chia seeds, flax, and berries.

  • Movement: Walking, resistance training, and core exercises stimulate gut motility.

  • Eat Protein First: Helps balance blood sugar and prevent cortisol spikes that slow digestion.

  • Mindful Bathroom Habits: Allow yourself unhurried time, and consider a footstool to improve elimination posture.

The Bottom Line

Constipation in perimenopause is common — but it’s not something you have to “just live with.” By understanding the hormonal shifts that cause it and using a targeted, root-cause approach, you can restore regular, comfortable digestion.

Supporting your gut with the right supplements, movement, hydration, and nutrient-dense food can make all the difference in this stage of life.

✨ You can find all of the products mentioned here at HealthyByDrJen.shop — curated to be safe, effective, and integrative medicine-approved.


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The entire contents of this website are based upon the opinions of Dr. Pfleghaar unless otherwise noted. Individual articles are based upon the opinions of the respective author, who retains copyright as marked. The information on this website is not intended to replace a one-on-one relationship with a qualified health care professional and is not intended as medical advice. It is intended as a sharing of knowledge and information from the research and experience of Dr. Pfleghaar and her community. Dr. Pfleghaar encourages you to make your own health care decisions based upon your research and in partnership with a qualified healthcare professional. These statements have not been evaluated by the Food and Drug Administration. Dr. Pfleghaar products are not intended to diagnose, treat, cure or prevent any disease. If you are pregnant, nursing, taking medication, or have a medical condition, consult your physician before using any products

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